Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DIO2-7	chr14:81158750-81159186	l_1018_chr14:81141451-81155425_testes

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10133617	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10137925	1.00[AMR][1000 genomes]
rs10140445	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10144134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150034	1.00[AMR][1000 genomes]
rs10150186	1.00[AMR][1000 genomes]
rs10151027	1.00[AMR][1000 genomes]
rs10151108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10162496	0.95[EUR][1000 genomes]
rs1375628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17110847	1.00[AMR][1000 genomes]
rs2197983	1.00[AMR][1000 genomes]
rs28451204	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28529404	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28650423	1.00[AMR][1000 genomes]
rs57834417	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58268321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73330508	1.00[AMR][1000 genomes]
rs73334792	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334800	0.96[AFR][1000 genomes]
rs74064297	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv974290	chr14:81155152-81161683	Weak transcription Enhancers Genic enhancers	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81147400-81171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:81148000-81167400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:81148400-81167200	Weak transcription	Fetal Thymus	thymus
4	chr14:81149000-81171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:81158000-81159200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:81158000-81159600	Genic enhancers	Dnd41	blood
7	chr14:81158600-81159600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr14:81158800-81159600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr14:81158800-81159600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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