Variant report

Variant	rs73353907
Chromosome Location	chr6:11438483-11438484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11438078..11439699-chr6:11488240..11490265,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs59642057	1.00[AMR][1000 genomes]
rs61474214	1.00[AMR][1000 genomes]
rs6907518	1.00[AMR][1000 genomes]
rs6938536	1.00[AMR][1000 genomes]
rs72544725	1.00[AMR][1000 genomes]
rs73351992	0.95[AFR][1000 genomes]
rs73353910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353912	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73366826	1.00[AMR][1000 genomes]
rs73366831	1.00[AMR][1000 genomes]
rs73366833	1.00[AMR][1000 genomes]
rs73366860	1.00[AMR][1000 genomes]
rs73366871	1.00[AMR][1000 genomes]
rs73366878	1.00[AMR][1000 genomes]
rs73366879	1.00[AMR][1000 genomes]
rs73366886	1.00[AMR][1000 genomes]
rs73366897	1.00[AMR][1000 genomes]
rs7768963	1.00[AMR][1000 genomes]
rs7776103	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11431000-11439200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:11435200-11441000	Weak transcription	Fetal Brain Male	brain
3	chr6:11435600-11439200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:11436200-11438600	Enhancers	Stomach Mucosa	stomach
5	chr6:11437800-11438600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:11437800-11438600	Enhancers	Lung	lung
7	chr6:11437800-11438800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:11437800-11440000	Enhancers	HUVEC	blood vessel
9	chr6:11438000-11438600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:11438000-11438600	Enhancers	Esophagus	oesophagus
11	chr6:11438000-11438600	Enhancers	A549	lung
12	chr6:11438000-11438600	Enhancers	HepG2	liver
13	chr6:11438000-11438600	Enhancers	HMEC	breast
14	chr6:11438000-11438600	Enhancers	NHLF	lung
15	chr6:11438000-11438800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:11438000-11438800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:11438000-11438800	Enhancers	NHDF-Ad	bronchial
18	chr6:11438000-11439200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:11438000-11439400	Enhancers	Right Atrium	heart
20	chr6:11438000-11439600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:11438000-11439600	Enhancers	Adipose Nuclei	Adipose
22	chr6:11438200-11438600	Enhancers	NH-A	brain
23	chr6:11438200-11438600	Enhancers	NHEK	skin
24	chr6:11438200-11438600	Enhancers	Osteobl	bone
25	chr6:11438200-11438800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:11438200-11438800	Enhancers	HSMM	muscle
27	chr6:11438200-11438800	Enhancers	HSMMtube	muscle
28	chr6:11438200-11439600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:11438400-11438600	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr6:11438400-11438600	Enhancers	Gastric	stomach
31	chr6:11438400-11438600	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr6:11438400-11438600	Enhancers	Small Intestine	intestine

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