Variant report

Variant	rs73353912
Chromosome Location	chr6:11449523-11449524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs59642057	1.00[AMR][1000 genomes]
rs61474214	1.00[AMR][1000 genomes]
rs6907518	1.00[AMR][1000 genomes]
rs6938536	1.00[AMR][1000 genomes]
rs72544725	1.00[AMR][1000 genomes]
rs73353907	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353910	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73366826	1.00[AMR][1000 genomes]
rs73366831	1.00[AMR][1000 genomes]
rs73366833	1.00[AMR][1000 genomes]
rs73366860	1.00[AMR][1000 genomes]
rs73366871	1.00[AMR][1000 genomes]
rs73366878	1.00[AMR][1000 genomes]
rs73366879	1.00[AMR][1000 genomes]
rs73366886	1.00[AMR][1000 genomes]
rs73366897	1.00[AMR][1000 genomes]
rs7768963	1.00[AMR][1000 genomes]
rs7776103	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11449000-11449800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:11449000-11455800	Weak transcription	Primary B cells from cord blood	blood
3	chr6:11449200-11449800	Enhancers	HepG2	liver
4	chr6:11449400-11449800	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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