Variant report

Variant	rs73366897
Chromosome Location	chr6:11395794-11395795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11137273..11139835-chr6:11395242..11397477,2	MCF-7	breast:
2	chr6:11389440..11392431-chr6:11393739..11396017,2	K562	blood:
3	chr6:11394123..11395903-chr6:11413687..11415867,2	MCF-7	breast:
4	chr6:11355160..11356813-chr6:11395233..11398054,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs59642057	1.00[AMR][1000 genomes]
rs61474214	1.00[AMR][1000 genomes]
rs6907518	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938536	1.00[AMR][1000 genomes]
rs72544725	1.00[AMR][1000 genomes]
rs73353907	1.00[AMR][1000 genomes]
rs73353910	1.00[AMR][1000 genomes]
rs73353912	1.00[AMR][1000 genomes]
rs73366826	1.00[AMR][1000 genomes]
rs73366831	1.00[AMR][1000 genomes]
rs73366833	1.00[AMR][1000 genomes]
rs73366860	1.00[AMR][1000 genomes]
rs73366871	1.00[AMR][1000 genomes]
rs73366878	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73366879	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73366886	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7768963	1.00[AMR][1000 genomes]
rs7776103	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11392400-11396000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr6:11393000-11396000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:11393600-11398000	Weak transcription	Lung	lung
4	chr6:11393600-11398600	Weak transcription	Adipose Nuclei	Adipose
5	chr6:11393800-11398000	Weak transcription	Liver	Liver
6	chr6:11394000-11397600	Weak transcription	Fetal Intestine Small	intestine
7	chr6:11394000-11398000	Enhancers	HepG2	liver
8	chr6:11394000-11405600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:11394200-11398000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:11394200-11398000	Weak transcription	Spleen	Spleen
11	chr6:11394200-11398800	Weak transcription	Fetal Lung	lung
12	chr6:11394400-11397400	Weak transcription	Fetal Intestine Large	intestine
13	chr6:11394800-11398000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:11394800-11398600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:11394800-11398600	Weak transcription	Fetal Kidney	kidney
16	chr6:11394800-11403600	Weak transcription	Primary B cells from cord blood	blood
17	chr6:11395000-11397800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr6:11395000-11397800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:11395000-11398600	Weak transcription	A549	lung
20	chr6:11395000-11398800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:11395200-11398800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:11395600-11395800	Enhancers	Primary B cells from peripheral blood	blood

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