Variant report

Variant	rs7335398
Chromosome Location	chr13:52169704-52169705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr13:52169550-52169750	NB4	blood:	n/a	chr13:52169589-52169599
2	SPI1	chr13:52169518-52169971	HL-60	blood:	n/a	chr13:52169759-52169766 chr13:52169778-52169791

No.	Distal block	Cell Line	Cell type
1	chr13:52165459..52167828-chr13:52169558..52171705,2	K562	blood:
2	chr13:52162017..52163554-chr13:52169450..52171353,2	MCF-7	breast:
3	chr13:52161931..52163460-chr13:52168528..52170984,2	K562	blood:
4	chr13:52163928..52166690-chr13:52169600..52171237,2	MCF-7	breast:
5	chr13:52023038..52025684-chr13:52169375..52171570,2	K562	blood:

Variant related genes	Relation type
RN7SL413P	TF binding region
ATP5F1P1	TF binding region

rs_ID	r²[population]
rs1547114	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs58586468	1.00[AMR][1000 genomes]
rs73492293	1.00[AMR][1000 genomes]
rs73494139	1.00[AMR][1000 genomes]
rs73494143	1.00[AMR][1000 genomes]
rs74084821	1.00[AMR][1000 genomes]
rs74084838	1.00[AMR][1000 genomes]
rs74084842	1.00[AMR][1000 genomes]
rs74084850	1.00[AMR][1000 genomes]
rs74084858	1.00[AMR][1000 genomes]
rs74084862	1.00[AMR][1000 genomes]
rs74084885	1.00[AMR][1000 genomes]
rs74084896	1.00[AMR][1000 genomes]
rs74086286	1.00[AMR][1000 genomes]
rs7993739	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52159600-52170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:52159600-52174600	Weak transcription	Spleen	Spleen
3	chr13:52160200-52170800	Weak transcription	Fetal Intestine Small	intestine
4	chr13:52160200-52181400	Weak transcription	Thymus	Thymus
5	chr13:52160400-52173400	Weak transcription	Right Atrium	heart
6	chr13:52160400-52177000	Weak transcription	Right Ventricle	heart
7	chr13:52160600-52172200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr13:52162800-52180200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr13:52163000-52170400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:52163200-52182600	Weak transcription	Ovary	ovary
11	chr13:52165400-52174200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr13:52165600-52170600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr13:52165600-52170600	Weak transcription	Psoas Muscle	Psoas
14	chr13:52165600-52173400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr13:52165600-52173400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr13:52165600-52188600	Weak transcription	Fetal Stomach	stomach
17	chr13:52165800-52170600	Weak transcription	Fetal Kidney	kidney
18	chr13:52165800-52173200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr13:52165800-52179000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr13:52166000-52170600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr13:52166000-52170800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr13:52166000-52172600	Weak transcription	Adipose Nuclei	Adipose
23	chr13:52166000-52172600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr13:52166000-52173600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr13:52166000-52175800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr13:52166000-52176400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr13:52166000-52181200	Weak transcription	NH-A	brain
28	chr13:52166200-52173400	Weak transcription	GM12878-XiMat	blood
29	chr13:52166200-52175600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr13:52166200-52178800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr13:52166200-52181200	Weak transcription	NHLF	lung
32	chr13:52166400-52170800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr13:52166400-52176200	Weak transcription	Osteobl	bone
34	chr13:52166400-52181200	Weak transcription	Hela-S3	cervix
35	chr13:52166600-52173400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr13:52167200-52170600	Weak transcription	HSMM	muscle
37	chr13:52167200-52173400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr13:52167400-52170000	Weak transcription	A549	lung
39	chr13:52167600-52179800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr13:52168000-52169800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr13:52168000-52169800	Enhancers	Primary T cells from cord blood	blood
42	chr13:52168000-52169800	Enhancers	Left Ventricle	heart
43	chr13:52168000-52169800	Enhancers	Pancreas	Pancrea
44	chr13:52168200-52170000	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr13:52168200-52170600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr13:52168200-52171400	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr13:52168200-52172000	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr13:52168400-52170600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr13:52168400-52177400	Weak transcription	Lung	lung
50	chr13:52168400-52194400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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