The 2.0 version of rSNPBase

Variant report

Variant rs74084842
Chromosome Location chr13:51972343-51972344
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:51945800-52016600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr13:51946200-51988000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr13:51949400-52025000 Weak transcription Fetal Muscle Leg muscle
4 chr13:51950000-52025200 Weak transcription Fetal Muscle Trunk muscle
5 chr13:51950200-51999800 Weak transcription Brain Germinal Matrix brain
6 chr13:51955200-51973600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
7 chr13:51957400-51978200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
8 chr13:51957800-51978400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr13:51957800-51986600 Weak transcription Fetal Thymus thymus
10 chr13:51958000-51996800 Weak transcription Thymus Thymus
11 chr13:51958200-51990000 Weak transcription HMEC breast
12 chr13:51958400-51987800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr13:51959200-51981200 Weak transcription Primary B cells from peripheral blood blood
14 chr13:51959800-51989400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr13:51960000-51973400 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr13:51962000-51976200 Weak transcription Dnd41 blood
17 chr13:51962200-51979400 Weak transcription HUVEC blood vessel
18 chr13:51962200-51989600 Weak transcription Primary T cells fromperipheralblood blood
19 chr13:51962200-51993200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
20 chr13:51963200-52024800 Weak transcription Fetal Intestine Large intestine
21 chr13:51963600-51989800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
22 chr13:51963600-52003600 Weak transcription Fetal Adrenal Gland Adrenal Gland
23 chr13:51966800-51973600 Weak transcription Primary B cells from cord blood blood
24 chr13:51968000-51973200 Weak transcription Primary hematopoietic stem cells short term culture blood
25 chr13:51968200-51989800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr13:51969400-51973200 Weak transcription HSMM muscle
27 chr13:51969600-51995000 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr13:51970400-51972400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr13:51970600-51972400 Enhancers iPS-20b Cell Line embryonic stem cell
30 chr13:51970600-51972400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
31 chr13:51970600-51972600 Enhancers Colon Smooth Muscle Colon
32 chr13:51970600-51972600 Enhancers Osteobl bone
33 chr13:51970600-51972800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr13:51970600-51973800 Enhancers Hela-S3 cervix
35 chr13:51970800-51972400 Enhancers Brain Hippocampus Middle brain
36 chr13:51970800-51972400 Enhancers Duodenum Smooth Muscle Duodenum
37 chr13:51970800-51972600 Enhancers A549 lung
38 chr13:51970800-51973200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr13:51970800-51973200 Enhancers NHDF-Ad bronchial
40 chr13:51970800-51973400 Weak transcription Psoas Muscle Psoas
41 chr13:51971000-51973200 Weak transcription GM12878-XiMat blood
42 chr13:51971000-51973600 Weak transcription Monocytes-CD14+_RO01746 blood
43 chr13:51971000-51979600 Weak transcription Primary monocytes fromperipheralblood blood
44 chr13:51971200-51972400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr13:51971200-51973400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr13:51971400-51972400 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr13:51971400-51972400 Enhancers Primary T helper naive cells fromperipheralblood blood
48 chr13:51971400-51972400 Genic enhancers HepG2 liver
49 chr13:51971400-51972600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr13:51971400-51972800 Enhancers HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015