Variant report

Variant	rs74087494
Chromosome Location	chr13:51920196-51920197
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:51918928..51921784-chr13:52026483..52029040,3	K562	blood:
2	chr13:51913987..51916839-chr13:51917071..51920239,3	MCF-7	breast:
3	chr13:51919543..51922334-chr13:51931291..51934011,2	K562	blood:

Variant related genes	Relation type
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000253309	Chromatin interaction
ENSG00000224892	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56035793	1.00[AMR][1000 genomes]
rs73492293	1.00[AMR][1000 genomes]
rs74084808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74084812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74084821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74084838	1.00[AMR][1000 genomes]
rs74084842	1.00[AMR][1000 genomes]
rs74084850	1.00[AMR][1000 genomes]
rs74084858	1.00[AMR][1000 genomes]
rs74084862	1.00[AMR][1000 genomes]
rs74084885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74084896	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51900400-51938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:51906000-51944400	Weak transcription	Spleen	Spleen
3	chr13:51906200-51935400	Weak transcription	HSMMtube	muscle
4	chr13:51907800-51933200	Weak transcription	Primary T cells from cord blood	blood
5	chr13:51911200-51920400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr13:51911800-51938600	Weak transcription	Pancreas	Pancrea
7	chr13:51913400-51944600	Weak transcription	Aorta	Aorta
8	chr13:51914200-51920200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:51914200-51926600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr13:51915200-51929400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr13:51915400-51934000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr13:51915800-51925400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:51916800-51931600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr13:51917200-51933600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:51917400-51922800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:51917400-51922800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr13:51917600-51926600	Weak transcription	HSMM	muscle
18	chr13:51917600-51933000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr13:51917600-51943200	Weak transcription	NHLF	lung
20	chr13:51917800-51942400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr13:51918000-51925400	Weak transcription	Liver	Liver
22	chr13:51918200-51933200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr13:51918400-51938600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr13:51918600-51935600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr13:51918600-51945000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr13:51919000-51944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr13:51920000-51920200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr13:51920000-51920200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr13:51920000-51921400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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