The 2.0 version of rSNPBase

Variant report

Variant rs74084850
Chromosome Location chr13:51992577-51992578
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:51945800-52016600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr13:51949400-52025000 Weak transcription Fetal Muscle Leg muscle
3 chr13:51950000-52025200 Weak transcription Fetal Muscle Trunk muscle
4 chr13:51950200-51999800 Weak transcription Brain Germinal Matrix brain
5 chr13:51958000-51996800 Weak transcription Thymus Thymus
6 chr13:51962200-51993200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
7 chr13:51963200-52024800 Weak transcription Fetal Intestine Large intestine
8 chr13:51963600-52003600 Weak transcription Fetal Adrenal Gland Adrenal Gland
9 chr13:51969600-51995000 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr13:51971800-52025000 Weak transcription Fetal Stomach stomach
11 chr13:51972000-51993400 Weak transcription Stomach Mucosa stomach
12 chr13:51972000-51995000 Weak transcription Placenta Placenta
13 chr13:51972000-51995200 Weak transcription HSMMtube muscle
14 chr13:51972000-51996800 Weak transcription Ovary ovary
15 chr13:51972000-51999400 Weak transcription Small Intestine intestine
16 chr13:51972000-52005200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr13:51972000-52016000 Weak transcription Pancreas Pancrea
18 chr13:51972400-51996400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr13:51972600-51993000 Weak transcription Colon Smooth Muscle Colon
20 chr13:51973800-51993200 Weak transcription Hela-S3 cervix
21 chr13:51977000-51996800 Weak transcription Brain Cingulate Gyrus brain
22 chr13:51978400-51995200 Weak transcription Gastric stomach
23 chr13:51978400-52003200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr13:51980000-51995000 Weak transcription Brain Substantia Nigra brain
25 chr13:51981600-51999400 Weak transcription Brain Angular Gyrus brain
26 chr13:51983800-51993000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr13:51984400-52024800 Weak transcription Placenta Amnion Placenta Amnion
28 chr13:51985000-51999400 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr13:51985400-51995000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr13:51985600-51995200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr13:51985800-51995400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
32 chr13:51986400-51996800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr13:51988200-52001000 Weak transcription Aorta Aorta
34 chr13:51988400-51993400 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr13:51988400-51995200 Weak transcription Left Ventricle heart
36 chr13:51988400-51995200 Weak transcription Right Atrium heart
37 chr13:51988400-51996600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
38 chr13:51988400-51996600 Weak transcription Psoas Muscle Psoas
39 chr13:51988600-51993400 Weak transcription Adipose Nuclei Adipose
40 chr13:51988600-51999400 Weak transcription Brain Anterior Caudate brain
41 chr13:51988600-51999400 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr13:51988800-51993000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
43 chr13:51988800-51994000 Weak transcription Primary T killer memory cells from peripheral blood blood
44 chr13:51988800-51999400 Weak transcription Brain Hippocampus Middle brain
45 chr13:51988800-52024400 Weak transcription Rectal Smooth Muscle rectum
46 chr13:51989400-51993600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr13:51989800-51995200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr13:51989800-51997800 Strong transcription HSMM muscle
49 chr13:51990000-51993800 Strong transcription NH-A brain
50 chr13:51990000-51994200 Strong transcription HMEC breast

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Last update: Aug 31, 2015