Variant report

Variant	rs73492293
Chromosome Location	chr13:52113419-52113420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52112849..52115667-chr13:52128292..52129894,2	MCF-7	breast:
2	chr13:52108221..52111487-chr13:52112339..52115268,3	K562	blood:
3	chr13:52024743..52028940-chr13:52112359..52118516,11	MCF-7	breast:
4	chr13:52025248..52026911-chr13:52113097..52115719,3	K562	blood:
5	chr13:52025591..52028718-chr13:52111998..52119680,9	MCF-7	breast:
6	chr13:52025248..52027565-chr13:52113097..52117557,5	K562	blood:

Variant related genes	Relation type
ENSG00000224892	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1547114	1.00[AMR][1000 genomes]
rs58586468	1.00[AMR][1000 genomes]
rs7335398	1.00[AMR][1000 genomes]
rs73494139	1.00[AMR][1000 genomes]
rs73494143	1.00[AMR][1000 genomes]
rs74084808	1.00[AMR][1000 genomes]
rs74084812	1.00[AMR][1000 genomes]
rs74084821	1.00[AMR][1000 genomes]
rs74084838	1.00[AMR][1000 genomes]
rs74084842	1.00[AMR][1000 genomes]
rs74084850	1.00[AMR][1000 genomes]
rs74084858	1.00[AMR][1000 genomes]
rs74084862	1.00[AMR][1000 genomes]
rs74084885	1.00[AMR][1000 genomes]
rs74084896	1.00[AMR][1000 genomes]
rs74086286	1.00[AMR][1000 genomes]
rs74087494	1.00[AMR][1000 genomes]
rs7993739	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52100200-52113800	Weak transcription	NHDF-Ad	bronchial
2	chr13:52107000-52114000	Weak transcription	Osteobl	bone
3	chr13:52107200-52114200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr13:52107200-52116600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:52108200-52116200	Weak transcription	Right Atrium	heart
6	chr13:52108800-52113800	Weak transcription	A549	lung
7	chr13:52109000-52114000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr13:52109000-52116200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr13:52109000-52116400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr13:52109200-52113800	Weak transcription	NHEK	skin
11	chr13:52109200-52114000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr13:52109400-52113800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:52109400-52114000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr13:52109600-52113800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr13:52109600-52114000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr13:52112400-52114600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr13:52112800-52113800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:52112800-52114600	Enhancers	HSMMtube	muscle
19	chr13:52112800-52116000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr13:52113000-52114000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr13:52113000-52116400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr13:52113000-52117600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr13:52113200-52113600	Enhancers	Fetal Muscle Leg	muscle
24	chr13:52113200-52114200	Weak transcription	Fetal Thymus	thymus
25	chr13:52113200-52115200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr13:52113200-52115200	Weak transcription	HepG2	liver
27	chr13:52113200-52115400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr13:52113200-52116000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr13:52113200-52116000	Weak transcription	Brain Anterior Caudate	brain
30	chr13:52113200-52116200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr13:52113200-52116600	Enhancers	Colon Smooth Muscle	Colon
32	chr13:52113200-52116800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr13:52113200-52116800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr13:52113200-52117400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr13:52113400-52113800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr13:52113400-52113800	Weak transcription	Hela-S3	cervix
37	chr13:52113400-52113800	Weak transcription	HSMM	muscle
38	chr13:52113400-52116400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr13:52113400-52116600	Weak transcription	H1 Cell Line	embryonic stem cell

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