Variant report

Variant	rs73374792
Chromosome Location	chr7:80814904-80814905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11768393	0.90[AFR][1000 genomes]
rs11768454	0.90[AFR][1000 genomes]
rs11975298	0.90[AFR][1000 genomes]
rs11980049	0.90[AFR][1000 genomes]
rs11981116	0.90[AFR][1000 genomes]
rs11982217	0.90[AFR][1000 genomes]
rs11982242	0.90[AFR][1000 genomes]
rs17154873	0.90[AFR][1000 genomes]
rs4606001	0.90[AFR][1000 genomes]
rs55731316	0.97[AFR][1000 genomes]
rs55908333	0.97[AFR][1000 genomes]
rs56283988	0.97[AFR][1000 genomes]
rs56299732	0.90[AFR][1000 genomes]
rs56347546	0.90[AFR][1000 genomes]
rs56707960	0.97[AFR][1000 genomes]
rs56968902	0.81[AFR][1000 genomes]
rs57771152	0.97[AFR][1000 genomes]
rs58631170	0.97[AFR][1000 genomes]
rs60859227	0.90[AFR][1000 genomes]
rs73374738	0.90[AFR][1000 genomes]
rs73374770	0.97[AFR][1000 genomes]
rs73378438	0.87[AFR][1000 genomes]
rs73384458	0.82[AFR][1000 genomes]
rs73384473	0.97[AFR][1000 genomes]
rs73384478	0.82[AFR][1000 genomes]
rs73384485	0.90[AFR][1000 genomes]
rs73384500	0.90[AFR][1000 genomes]
rs73386404	0.90[AFR][1000 genomes]
rs7796420	0.90[AFR][1000 genomes]
rs996722	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888557	chr7:80813081-80917148	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80803800-80819800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:80805000-80819800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:80812800-80816600	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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