Variant report

Variant	rs73384473
Chromosome Location	chr7:80780863-80780864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80779464..80781511-chr7:80784882..80787080,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11768393	0.94[AFR][1000 genomes]
rs11768454	0.94[AFR][1000 genomes]
rs11975298	0.94[AFR][1000 genomes]
rs11980049	0.94[AFR][1000 genomes]
rs11981116	0.94[AFR][1000 genomes]
rs11982217	0.94[AFR][1000 genomes]
rs11982242	0.94[AFR][1000 genomes]
rs17154873	0.94[AFR][1000 genomes]
rs4606001	0.94[AFR][1000 genomes]
rs55731316	1.00[AFR][1000 genomes]
rs55908333	1.00[AFR][1000 genomes]
rs56283988	1.00[AFR][1000 genomes]
rs56299732	0.94[AFR][1000 genomes]
rs56347546	0.94[AFR][1000 genomes]
rs56707960	1.00[AFR][1000 genomes]
rs56968902	0.84[AFR][1000 genomes]
rs57771152	1.00[AFR][1000 genomes]
rs58631170	1.00[AFR][1000 genomes]
rs60859227	0.94[AFR][1000 genomes]
rs73374738	0.94[AFR][1000 genomes]
rs73374770	1.00[AFR][1000 genomes]
rs73374792	0.97[AFR][1000 genomes]
rs73378438	0.90[AFR][1000 genomes]
rs73384458	0.86[AFR][1000 genomes]
rs73384478	0.86[AFR][1000 genomes]
rs73384485	0.94[AFR][1000 genomes]
rs73384500	0.94[AFR][1000 genomes]
rs73386404	0.94[AFR][1000 genomes]
rs7796420	0.94[AFR][1000 genomes]
rs996722	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80778400-80783400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:80780000-80781200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:80780200-80781000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:80780200-80781200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:80780200-80781200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:80780200-80781200	Enhancers	A549	lung
7	chr7:80780200-80781200	Enhancers	HSMM	muscle
8	chr7:80780200-80781400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:80780200-80781400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:80780200-80781400	Enhancers	Psoas Muscle	Psoas
11	chr7:80780200-80781400	Enhancers	NHDF-Ad	bronchial
12	chr7:80780200-80781600	Enhancers	HepG2	liver
13	chr7:80780200-80781800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:80780400-80781000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:80780400-80781400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:80780600-80781000	Enhancers	Brain Hippocampus Middle	brain
17	chr7:80780600-80781400	Enhancers	Brain Substantia Nigra	brain
18	chr7:80780600-80783400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:80780600-80783400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:80780600-80784400	Weak transcription	HMEC	breast
21	chr7:80780600-80787000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr7:80780600-80791000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:80780800-80785200	Weak transcription	Brain Anterior Caudate	brain

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