Variant report

Variant	rs73384458
Chromosome Location	chr7:80777373-80777374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11768393	0.81[AFR][1000 genomes]
rs11768454	0.81[AFR][1000 genomes]
rs11975298	0.81[AFR][1000 genomes]
rs11980049	0.81[AFR][1000 genomes]
rs11981116	0.81[AFR][1000 genomes]
rs11982217	0.81[AFR][1000 genomes]
rs11982242	0.81[AFR][1000 genomes]
rs17154873	0.81[AFR][1000 genomes]
rs4606001	0.81[AFR][1000 genomes]
rs55731316	0.86[AFR][1000 genomes]
rs55908333	0.86[AFR][1000 genomes]
rs56283988	0.86[AFR][1000 genomes]
rs56299732	0.81[AFR][1000 genomes]
rs56347546	0.81[AFR][1000 genomes]
rs56707960	0.86[AFR][1000 genomes]
rs56968902	0.83[AFR][1000 genomes]
rs57771152	0.86[AFR][1000 genomes]
rs58631170	0.86[AFR][1000 genomes]
rs60859227	0.81[AFR][1000 genomes]
rs73374738	0.81[AFR][1000 genomes]
rs73374770	0.86[AFR][1000 genomes]
rs73374792	0.82[AFR][1000 genomes]
rs73374798	0.92[AFR][1000 genomes]
rs73384473	0.86[AFR][1000 genomes]
rs73384478	1.00[AFR][1000 genomes]
rs73384485	0.81[AFR][1000 genomes]
rs73384500	0.81[AFR][1000 genomes]
rs73386404	0.81[AFR][1000 genomes]
rs7796420	0.81[AFR][1000 genomes]
rs996722	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80763200-80780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:80777000-80780200	Weak transcription	Rectal Smooth Muscle	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links