Variant report

Variant	rs7796420
Chromosome Location	chr7:80817914-80817915
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80546955..80550718-chr7:80817331..80823169,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10282195	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11767232	0.87[EUR][1000 genomes]
rs11768393	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11768454	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11973996	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11975298	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11980049	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11981116	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11982217	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11982242	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11983345	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11984187	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16886981	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16887030	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17154836	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17154873	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2367225	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28470599	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3914075	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4606001	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55731316	0.94[AFR][1000 genomes]
rs55908333	0.94[AFR][1000 genomes]
rs56283988	0.94[AFR][1000 genomes]
rs56299732	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56347546	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56707960	0.94[AFR][1000 genomes]
rs56968902	0.84[AFR][1000 genomes]
rs57292892	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57771152	0.94[AFR][1000 genomes]
rs58500032	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58631170	0.94[AFR][1000 genomes]
rs60103966	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60640315	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60859227	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73374738	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73374770	0.94[AFR][1000 genomes]
rs73374792	0.90[AFR][1000 genomes]
rs73378438	0.84[AFR][1000 genomes]
rs73384446	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73384451	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73384458	0.81[AFR][1000 genomes]
rs73384473	0.94[AFR][1000 genomes]
rs73384478	0.81[AFR][1000 genomes]
rs73384485	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73384500	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73386404	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7812231	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs996722	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888557	chr7:80813081-80917148	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1023149	chr7:80817550-80928090	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80803800-80819800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:80805000-80819800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:80816200-80818000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:80816200-80820000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:80816800-80820000	Weak transcription	Psoas Muscle	Psoas
6	chr7:80817000-80820000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:80817200-80820000	Weak transcription	Osteobl	bone
8	chr7:80817200-80820200	Weak transcription	Adipose Nuclei	Adipose
9	chr7:80817400-80819800	Weak transcription	NHLF	lung
10	chr7:80817400-80820000	Weak transcription	NHDF-Ad	bronchial
11	chr7:80817600-80819800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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