Variant report

Variant	rs73389888
Chromosome Location	chr8:130447583-130447584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56699876	1.00[AMR][1000 genomes]
rs57753030	1.00[AMR][1000 genomes]
rs58395590	1.00[AMR][1000 genomes]
rs73385577	1.00[AMR][1000 genomes]
rs73385584	1.00[AMR][1000 genomes]
rs73387194	1.00[AMR][1000 genomes]
rs73387198	1.00[AMR][1000 genomes]
rs73391603	1.00[AMR][1000 genomes]
rs73391699	1.00[AMR][1000 genomes]
rs73391807	1.00[AMR][1000 genomes]
rs73391825	1.00[AMR][1000 genomes]
rs73391851	1.00[AMR][1000 genomes]
rs73391857	1.00[AMR][1000 genomes]
rs73397786	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130427000-130449000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130445400-130447800	Weak transcription	K562	blood
3	chr8:130446400-130449400	ZNF genes & repeats	Dnd41	blood
4	chr8:130447200-130448800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:130447400-130449400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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