Variant report

Variant	rs73391825
Chromosome Location	chr8:130466088-130466089
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56699876	1.00[AMR][1000 genomes]
rs57753030	1.00[AMR][1000 genomes]
rs58395590	1.00[AMR][1000 genomes]
rs73385577	1.00[AMR][1000 genomes]
rs73385584	1.00[AMR][1000 genomes]
rs73387194	1.00[AMR][1000 genomes]
rs73387198	1.00[AMR][1000 genomes]
rs73389888	1.00[AMR][1000 genomes]
rs73391603	1.00[AMR][1000 genomes]
rs73391699	1.00[AMR][1000 genomes]
rs73391807	1.00[AMR][1000 genomes]
rs73391851	1.00[AMR][1000 genomes]
rs73391857	1.00[AMR][1000 genomes]
rs73397786	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015611	chr8:130449321-130502086	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130459400-130471800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr8:130463400-130467600	Weak transcription	Dnd41	blood
3	chr8:130463400-130470400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:130464600-130471800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:130465400-130472000	Genic enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links