Variant report

Variant	rs73425304
Chromosome Location	chr12:87822049-87822050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17014865	1.00[AFR][1000 genomes]
rs55668611	1.00[AFR][1000 genomes]
rs55943699	1.00[AFR][1000 genomes]
rs55948545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57480049	1.00[AFR][1000 genomes]
rs58318747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60791984	1.00[AFR][1000 genomes]
rs67469634	1.00[AFR][1000 genomes]
rs67896401	0.92[AFR][1000 genomes]
rs67914274	0.97[AFR][1000 genomes]
rs68045477	1.00[AFR][1000 genomes]
rs73409380	0.97[AFR][1000 genomes]
rs73409384	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430523	chr12:87757132-87865832	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv430525	chr12:87757132-87905532	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3329221	chr12:87785317-87833393	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv559701	chr12:87801947-87905878	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3350469	chr12:87802235-87844904	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87808600-87822600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:87821000-87822200	Weak transcription	A549	lung
3	chr12:87821200-87822200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:87821400-87823200	Enhancers	NHEK	skin
5	chr12:87821600-87823400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr12:87821600-87823800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr12:87821600-87823800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:87822000-87822800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:87822000-87824200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:87822000-87824800	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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