Variant report
| Variant | rs73425345 |
|---|---|
| Chromosome Location | chr12:87842123-87842124 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs17014865 | 1.00[AFR][1000 genomes] |
| rs55668611 | 1.00[AFR][1000 genomes] |
| rs55943699 | 1.00[AFR][1000 genomes] |
| rs55948545 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57480049 | 1.00[AFR][1000 genomes] |
| rs58318747 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60791984 | 1.00[AFR][1000 genomes] |
| rs67469634 | 1.00[AFR][1000 genomes] |
| rs67896401 | 0.92[AFR][1000 genomes] |
| rs67914274 | 0.97[AFR][1000 genomes] |
| rs68045477 | 1.00[AFR][1000 genomes] |
| rs73409380 | 0.97[AFR][1000 genomes] |
| rs73409384 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73425304 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73425344 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430523 | chr12:87757132-87865832 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv430525 | chr12:87757132-87905532 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv559701 | chr12:87801947-87905878 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv3350469 | chr12:87802235-87844904 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:87838200-87848400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
