Variant report

Variant	rs67896401
Chromosome Location	chr12:87843550-87843551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs11831047	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11832191	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014865	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55634446	0.91[EUR][1000 genomes]
rs55668611	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55891301	0.84[EUR][1000 genomes]
rs55943699	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55948545	0.92[AFR][1000 genomes]
rs55962892	0.84[EUR][1000 genomes]
rs55996691	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56008238	0.84[EUR][1000 genomes]
rs56023642	0.84[EUR][1000 genomes]
rs56206247	0.84[EUR][1000 genomes]
rs56213136	0.84[EUR][1000 genomes]
rs56275058	0.84[EUR][1000 genomes]
rs56285200	0.84[EUR][1000 genomes]
rs56390837	0.84[EUR][1000 genomes]
rs57480049	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58318747	0.92[AFR][1000 genomes]
rs59050497	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60791984	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66862156	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67469634	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67551828	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67559359	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67770812	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67914274	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs68045477	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73189250	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73189262	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73189270	0.91[EUR][1000 genomes]
rs73189277	0.91[EUR][1000 genomes]
rs73189291	0.91[EUR][1000 genomes]
rs73189292	0.91[EUR][1000 genomes]
rs73190009	0.96[EUR][1000 genomes]
rs73190010	0.84[EUR][1000 genomes]
rs73190014	0.84[EUR][1000 genomes]
rs73190016	0.84[EUR][1000 genomes]
rs73190019	0.84[EUR][1000 genomes]
rs73190020	0.84[EUR][1000 genomes]
rs73190021	0.84[EUR][1000 genomes]
rs73190023	0.84[EUR][1000 genomes]
rs73190027	0.96[EUR][1000 genomes]
rs73190028	0.84[EUR][1000 genomes]
rs73190030	0.84[EUR][1000 genomes]
rs73190033	0.84[EUR][1000 genomes]
rs73190036	0.84[EUR][1000 genomes]
rs73190049	0.84[EUR][1000 genomes]
rs73190050	0.84[EUR][1000 genomes]
rs73193947	0.84[EUR][1000 genomes]
rs73193953	0.84[EUR][1000 genomes]
rs73193955	0.91[EUR][1000 genomes]
rs73193996	0.84[EUR][1000 genomes]
rs73195712	0.84[EUR][1000 genomes]
rs73195714	0.84[EUR][1000 genomes]
rs73195716	0.84[EUR][1000 genomes]
rs73195720	0.84[EUR][1000 genomes]
rs73195722	0.84[EUR][1000 genomes]
rs73195735	0.84[EUR][1000 genomes]
rs73197650	0.84[EUR][1000 genomes]
rs73197659	0.84[EUR][1000 genomes]
rs73197662	0.84[EUR][1000 genomes]
rs73197664	0.84[EUR][1000 genomes]
rs73197667	0.84[EUR][1000 genomes]
rs73197668	0.84[EUR][1000 genomes]
rs73197669	0.84[EUR][1000 genomes]
rs73197670	0.84[EUR][1000 genomes]
rs73197675	0.84[EUR][1000 genomes]
rs73198265	0.84[EUR][1000 genomes]
rs73201574	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73201584	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73201588	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73203510	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73203516	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73203525	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409380	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73409384	0.89[AFR][1000 genomes]
rs73425304	0.92[AFR][1000 genomes]
rs73425344	0.92[AFR][1000 genomes]
rs73425345	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430523	chr12:87757132-87865832	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv430525	chr12:87757132-87905532	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv559701	chr12:87801947-87905878	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3350469	chr12:87802235-87844904	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87838200-87848400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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