Variant report

Variant	rs55668611
Chromosome Location	chr12:87835563-87835564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:87821658..87824109-chr12:87834973..87836828,2	MCF-7	breast:
2	chr12:87834051..87835864-chr12:87837793..87840659,2	MCF-7	breast:
3	chr12:87834030..87835899-chr12:87838496..87840072,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs11831047	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11832191	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17014865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55634446	0.80[EUR][1000 genomes]
rs55891301	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55943699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55948545	1.00[AFR][1000 genomes]
rs55962892	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55996691	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56008238	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56023642	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56206247	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56213136	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56275058	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56285200	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56390837	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57480049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58318747	1.00[AFR][1000 genomes]
rs59050497	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60791984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66862156	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67469634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67551828	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67559359	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67770812	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67896401	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67914274	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs68045477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73189250	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73189262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73189270	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73189272	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73189275	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73189277	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73189291	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73189292	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73190009	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73190010	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73190014	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73190016	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73190019	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73190020	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73190021	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73190023	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73190027	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73190028	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73190030	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73190033	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73190036	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73190049	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73190050	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73193407	0.83[AMR][1000 genomes]
rs73193409	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73193410	0.80[EUR][1000 genomes]
rs73193947	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73193953	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73193955	0.80[EUR][1000 genomes]
rs73193996	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73195712	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73195714	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73195716	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73195720	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73195722	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73195735	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73197650	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73197659	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73197662	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73197664	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73197667	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73197668	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73197669	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73197670	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73197675	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73198265	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73201574	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73201584	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73201588	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73203510	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73203516	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73203525	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73409380	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73409384	0.97[AFR][1000 genomes]
rs73425304	1.00[AFR][1000 genomes]
rs73425344	1.00[AFR][1000 genomes]
rs73425345	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430523	chr12:87757132-87865832	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv430525	chr12:87757132-87905532	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv559701	chr12:87801947-87905878	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3350469	chr12:87802235-87844904	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87833200-87835600	Enhancers	HMEC	breast
2	chr12:87833200-87835800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:87834600-87837400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:87835000-87837400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:87835000-87837600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:87835200-87837200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr12:87835200-87837600	Weak transcription	NHEK	skin
8	chr12:87835400-87835600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr12:87835400-87837600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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