Variant report

Variant	rs73189277
Chromosome Location	chr12:87861624-87861625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11831047	0.91[EUR][1000 genomes]
rs11832191	0.91[EUR][1000 genomes]
rs17014865	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55634446	1.00[EUR][1000 genomes]
rs55668611	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55891301	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55943699	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55962892	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55996691	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56008238	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56023642	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56206247	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56213136	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56275058	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56285200	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56390837	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57480049	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59050497	0.80[EUR][1000 genomes]
rs60791984	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs66862156	0.80[EUR][1000 genomes]
rs67469634	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs67551828	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67559359	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67770812	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67896401	0.91[EUR][1000 genomes]
rs67914274	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs68045477	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73189250	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73189262	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73189270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73189272	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73189275	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73189291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73189292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190009	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73190010	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73190014	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73190016	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73190019	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73190020	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73190021	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73190023	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73190027	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73190028	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73190030	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73190033	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73190036	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73190049	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73190050	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73193407	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73193409	1.00[AMR][1000 genomes]
rs73193410	0.93[AMR][1000 genomes]
rs73193947	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73193953	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73193955	1.00[EUR][1000 genomes]
rs73193996	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73195712	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73195714	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73195716	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73195720	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73195722	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73195735	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73197650	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73197659	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73197662	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73197664	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73197667	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73197668	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73197669	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73197670	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73197675	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73198265	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73201574	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73201584	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73201588	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73203510	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73203516	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73203525	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73409380	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430523	chr12:87757132-87865832	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv430525	chr12:87757132-87905532	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv559701	chr12:87801947-87905878	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87849400-87867600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:87859400-87862000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:87859600-87862000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr12:87860000-87861800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:87860600-87863000	Weak transcription	Pancreas	Pancrea
6	chr12:87861400-87862400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:87861400-87862800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr12:87861400-87863400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr12:87861600-87862000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr12:87861600-87862000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr12:87861600-87862000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr12:87861600-87862400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr12:87861600-87863400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links