Variant report

Variant	rs55962892
Chromosome Location	chr12:87776667-87776668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:87775414..87778904-chr12:87782463..87785146,3	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11831047	0.84[EUR][1000 genomes]
rs11832191	0.84[EUR][1000 genomes]
rs17014865	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55634446	0.84[EUR][1000 genomes]
rs55668611	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55891301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55943699	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55996691	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56008238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56023642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56206247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56213136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56275058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56285200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56390837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57480049	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59050497	0.96[EUR][1000 genomes]
rs60791984	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66862156	0.96[EUR][1000 genomes]
rs67469634	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67551828	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67559359	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67770812	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67896401	0.84[EUR][1000 genomes]
rs67914274	0.92[EUR][1000 genomes]
rs68045477	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73189250	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73189262	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73189270	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73189272	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73189275	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73189277	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73189291	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73189292	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73190009	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73190010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190027	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73190028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73193407	0.87[AMR][1000 genomes]
rs73193409	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73193410	0.84[EUR][1000 genomes]
rs73193947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73193953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73193955	0.84[EUR][1000 genomes]
rs73193996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73195712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73195714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73195716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73195720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73195722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73195735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197664	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73198265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73201574	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73201584	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73201588	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73203510	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73203516	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73203525	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73409380	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427918	chr12:87647585-87786660	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430523	chr12:87757132-87865832	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv430525	chr12:87757132-87905532	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87776000-87777000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:87776600-87778400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr12:87776600-87778400	Enhancers	Fetal Intestine Small	intestine
4	chr12:87776600-87778600	Enhancers	HUES64 Cell Line	embryonic stem cell

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