Variant report

Variant	rs73429845
Chromosome Location	chr7:120562540-120562541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs28525210	0.91[AFR][1000 genomes]
rs73425892	0.87[AFR][1000 genomes]
rs73425893	0.87[AFR][1000 genomes]
rs73425902	0.87[AFR][1000 genomes]
rs73427815	0.87[AFR][1000 genomes]
rs73427818	0.87[AFR][1000 genomes]
rs73427823	0.87[AFR][1000 genomes]
rs73427827	0.87[AFR][1000 genomes]
rs73427829	0.91[AFR][1000 genomes]
rs73427832	0.91[AFR][1000 genomes]
rs73427837	0.91[AFR][1000 genomes]
rs73427838	0.91[AFR][1000 genomes]
rs73427841	0.87[AFR][1000 genomes]
rs73427843	0.91[AFR][1000 genomes]
rs73427847	0.91[AFR][1000 genomes]
rs73427848	0.91[AFR][1000 genomes]
rs73427851	0.91[AFR][1000 genomes]
rs73427852	0.91[AFR][1000 genomes]
rs73427854	0.91[AFR][1000 genomes]
rs73427859	0.91[AFR][1000 genomes]
rs73429812	0.91[AFR][1000 genomes]
rs73429815	0.91[AFR][1000 genomes]
rs73429821	0.91[AFR][1000 genomes]
rs73429825	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120556000-120567200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120562000-120562800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr7:120562200-120562600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:120562200-120562600	Enhancers	Fetal Heart	heart
5	chr7:120562200-120562800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:120562200-120562800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:120562400-120562800	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links