Variant report

Variant	rs73429821
Chromosome Location	chr7:120547213-120547214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120546601..120548210-chr7:120589697..120591891,3	K562	blood:
2	chr7:120546933..120548726-chr7:120560234..120561928,2	K562	blood:
3	chr7:120536282..120540168-chr7:120546735..120550656,4	K562	blood:
4	chr7:120546601..120548199-chr7:120589910..120591891,2	K562	blood:
5	chr19:2269083..2270722-chr7:120546754..120549079,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071243	Chromatin interaction
ENSG00000167476	Chromatin interaction
ENSG00000104904	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2525707	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28525210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425886	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425892	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425893	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425902	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427815	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427818	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427823	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427827	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427841	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427885	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429845	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv274964	chr7:120522471-120549440	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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