Variant report

Variant	rs2525707
Chromosome Location	chr7:120558615-120558616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs28525210	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425886	1.00[AMR][1000 genomes]
rs73425892	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425893	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425902	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427815	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427818	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427823	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427827	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427829	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427832	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427837	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427838	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427841	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427843	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427847	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427848	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427851	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427852	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427854	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427859	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427885	1.00[AMR][1000 genomes]
rs73429812	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429815	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429821	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429825	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv437030	chr7:120550667-120562313	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv438002	chr7:120556620-120559538	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120556000-120567200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120556600-120561600	Weak transcription	Fetal Heart	heart
3	chr7:120557800-120559200	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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