Variant report

Variant	rs28525210
Chromosome Location	chr7:120561104-120561105
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120546933..120548726-chr7:120560234..120561928,2	K562	blood:
2	chr7:120558221..120561390-chr7:120571663..120574345,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2525707	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425886	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425892	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425893	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425902	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427815	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427818	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427823	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427827	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427841	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427885	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429845	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv437030	chr7:120550667-120562313	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120556000-120567200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120556600-120561600	Weak transcription	Fetal Heart	heart
3	chr7:120560400-120561400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:120560800-120561400	Enhancers	Hela-S3	cervix

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