Variant report

Variant	rs73425886
Chromosome Location	chr7:120471153-120471154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120467470..120469909-chr7:120470900..120473460,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2525707	1.00[AMR][1000 genomes]
rs28525210	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425892	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425893	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425902	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427815	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427818	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427823	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427827	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427829	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427832	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427837	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427838	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427841	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427843	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427847	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427848	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427851	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427852	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427854	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427859	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427885	1.00[AMR][1000 genomes]
rs73429812	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429815	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429821	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429825	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv5929	chr7:120467591-120513472	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120443000-120488000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:120445200-120494400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:120446000-120476200	Weak transcription	Left Ventricle	heart
4	chr7:120447400-120471400	Weak transcription	Fetal Kidney	kidney
5	chr7:120449800-120476000	Weak transcription	HUVEC	blood vessel
6	chr7:120452800-120476000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:120455600-120472200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr7:120455800-120474400	Weak transcription	Fetal Intestine Large	intestine
9	chr7:120455800-120476000	Weak transcription	Fetal Muscle Leg	muscle
10	chr7:120458400-120475800	Weak transcription	Fetal Intestine Small	intestine
11	chr7:120464000-120476000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:120466000-120473600	Weak transcription	Fetal Lung	lung
13	chr7:120466000-120479600	Weak transcription	Ovary	ovary
14	chr7:120466600-120476200	Weak transcription	Gastric	stomach
15	chr7:120466800-120482400	Weak transcription	Small Intestine	intestine
16	chr7:120467000-120476200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr7:120468200-120472400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:120468200-120473800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr7:120468400-120472200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr7:120468400-120472400	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:120468400-120479000	Weak transcription	Fetal Heart	heart
22	chr7:120468600-120471400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:120468600-120472200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr7:120468600-120475800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:120468600-120477000	Weak transcription	Fetal Stomach	stomach
26	chr7:120468600-120482200	Weak transcription	Pancreas	Pancrea
27	chr7:120468600-120482400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr7:120468600-120483200	Weak transcription	Right Ventricle	heart
29	chr7:120468600-120487600	Weak transcription	Lung	lung
30	chr7:120468800-120472400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr7:120468800-120476000	Weak transcription	Aorta	Aorta
32	chr7:120469800-120472200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr7:120469800-120472200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr7:120469800-120472200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:120469800-120476000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr7:120470000-120471400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr7:120470000-120476200	Weak transcription	Liver	Liver
38	chr7:120470200-120472000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr7:120470200-120472200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr7:120470400-120471600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:120470400-120472400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr7:120470600-120471800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr7:120470600-120484600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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