Variant report

Variant	rs73427829
Chromosome Location	chr7:120499115-120499116
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:3072484..3075327-chr7:120496877..120499119,2	MCF-7	breast:
2	chr7:120495769..120499665-chr7:120588624..120592417,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131652	Chromatin interaction
ENSG00000071243	Chromatin interaction
ENSG00000103145	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2525707	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28525210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425886	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425892	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425893	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425902	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427815	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427818	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427823	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427827	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427841	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427885	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429845	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv5929	chr7:120467591-120513472	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120497200-120499200	Active TSS	Rectal Mucosa Donor 31	rectum
2	chr7:120498400-120499200	Enhancers	Small Intestine	intestine
3	chr7:120498400-120499400	Bivalent/Poised TSS	Fetal Brain Male	brain
4	chr7:120498400-120504600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:120498400-120506800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:120498600-120499400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:120498600-120499600	Weak transcription	Placenta	Placenta
8	chr7:120498600-120499800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:120498600-120499800	Weak transcription	Colonic Mucosa	Colon
10	chr7:120498800-120499200	Enhancers	HUVEC	blood vessel
11	chr7:120498800-120499400	Weak transcription	Fetal Muscle Leg	muscle
12	chr7:120498800-120499800	Enhancers	Fetal Heart	heart
13	chr7:120499000-120499200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:120499000-120499400	Enhancers	Fetal Kidney	kidney
15	chr7:120499000-120499400	Enhancers	Hela-S3	cervix
16	chr7:120499000-120499600	Enhancers	Duodenum Mucosa	Duodenum
17	chr7:120499000-120500200	Enhancers	Fetal Intestine Small	intestine
18	chr7:120499000-120500200	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr7:120499000-120500400	Enhancers	Fetal Intestine Large	intestine
20	chr7:120499000-120503200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:120499000-120504600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:120499000-120504800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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