Variant report

Variant	rs73432254
Chromosome Location	chr6:44432674-44432675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44423082..44425791-chr6:44432215..44434664,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16872096	1.00[AMR][1000 genomes]
rs16872169	1.00[AMR][1000 genomes]
rs61151000	1.00[AMR][1000 genomes]
rs6901424	1.00[AMR][1000 genomes]
rs73432248	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73432251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73432252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73432255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7760256	1.00[AMR][1000 genomes]
rs9395019	0.82[AFR][1000 genomes]
rs9689182	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603006	chr6:44428506-44449697	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv885860	chr6:44428506-44454333	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44396600-44432800	Weak transcription	Fetal Kidney	kidney
2	chr6:44424800-44439400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:44425000-44437800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:44429400-44433600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:44430200-44433200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:44430200-44433200	Enhancers	Spleen	Spleen
7	chr6:44430200-44433400	Enhancers	Ovary	ovary
8	chr6:44430400-44433400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:44430600-44433400	Enhancers	HSMMtube	muscle
10	chr6:44430600-44439400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:44430800-44433200	Enhancers	HSMM	muscle
12	chr6:44431200-44433200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:44431400-44433000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr6:44431400-44433800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:44431600-44433600	Enhancers	Fetal Heart	heart
16	chr6:44431600-44436800	Weak transcription	K562	blood
17	chr6:44431800-44433000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:44431800-44433000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:44431800-44433000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:44431800-44433200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:44431800-44433200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:44431800-44433200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:44431800-44433200	Enhancers	Adipose Nuclei	Adipose
24	chr6:44432000-44432800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:44432000-44432800	Enhancers	Osteobl	bone
26	chr6:44432000-44433000	Enhancers	Fetal Muscle Trunk	muscle
27	chr6:44432000-44433200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:44432000-44433200	Enhancers	NHLF	lung
29	chr6:44432200-44432800	Weak transcription	Lung	lung
30	chr6:44432200-44433400	Enhancers	HepG2	liver
31	chr6:44432200-44443400	Weak transcription	Right Atrium	heart
32	chr6:44432400-44432800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:44432400-44432800	Enhancers	Fetal Lung	lung
34	chr6:44432400-44433000	Enhancers	NHDF-Ad	bronchial
35	chr6:44432400-44433400	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links