Variant report

Variant	rs73432255
Chromosome Location	chr6:44433004-44433005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44423082..44425791-chr6:44432215..44434664,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16872096	1.00[AMR][1000 genomes]
rs16872169	1.00[AMR][1000 genomes]
rs61151000	1.00[AMR][1000 genomes]
rs6901424	1.00[AMR][1000 genomes]
rs73432248	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73432251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73432252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73432254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7760256	1.00[AMR][1000 genomes]
rs9395019	0.82[AFR][1000 genomes]
rs9689182	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603006	chr6:44428506-44449697	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv885860	chr6:44428506-44454333	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44424800-44439400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:44425000-44437800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:44429400-44433600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:44430200-44433200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:44430200-44433200	Enhancers	Spleen	Spleen
6	chr6:44430200-44433400	Enhancers	Ovary	ovary
7	chr6:44430400-44433400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:44430600-44433400	Enhancers	HSMMtube	muscle
9	chr6:44430600-44439400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:44430800-44433200	Enhancers	HSMM	muscle
11	chr6:44431200-44433200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:44431400-44433800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:44431600-44433600	Enhancers	Fetal Heart	heart
14	chr6:44431600-44436800	Weak transcription	K562	blood
15	chr6:44431800-44433200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:44431800-44433200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:44431800-44433200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:44431800-44433200	Enhancers	Adipose Nuclei	Adipose
19	chr6:44432000-44433200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:44432000-44433200	Enhancers	NHLF	lung
21	chr6:44432200-44433400	Enhancers	HepG2	liver
22	chr6:44432200-44443400	Weak transcription	Right Atrium	heart
23	chr6:44432400-44433400	Enhancers	Placenta	Placenta
24	chr6:44432800-44433200	Enhancers	Fetal Kidney	kidney
25	chr6:44432800-44433200	Enhancers	Pancreas	Pancrea
26	chr6:44432800-44439600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:44433000-44433200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:44433000-44437400	Weak transcription	Lung	lung
29	chr6:44433000-44437800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr6:44433000-44443200	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links