Variant report
| Variant | rs73443517 |
|---|---|
| Chromosome Location | chr7:136470589-136470590 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:3)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-PTN-2 | chr7:136468822-136470638 | ENSG00000234352 |
| 2 | lnc-PTN-2 | chr7:136470446-136470638 | ENSG00000234352.5 |
| 3 | lnc-PTN-2 | chr7:136470446-136470638 | ENSG00000234352.5 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs58692102 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59103221 | 1.00[AMR][1000 genomes] |
| rs59580970 | 1.00[AMR][1000 genomes] |
| rs61093667 | 1.00[AMR][1000 genomes] |
| rs73443599 | 1.00[AMR][1000 genomes] |
| rs73445249 | 1.00[AMR][1000 genomes] |
| rs73457645 | 1.00[AMR][1000 genomes] |
| rs73459634 | 1.00[AMR][1000 genomes] |
| rs73459657 | 1.00[AMR][1000 genomes] |
| rs73459662 | 1.00[AMR][1000 genomes] |
| rs73459663 | 1.00[AMR][1000 genomes] |
| rs73459665 | 1.00[AMR][1000 genomes] |
| rs73459667 | 1.00[AMR][1000 genomes] |
| rs73459677 | 1.00[AMR][1000 genomes] |
| rs73459684 | 1.00[AMR][1000 genomes] |
| rs73459697 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3374876 | chr7:136413245-136480051 | Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1029192 | chr7:136433278-137147566 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
