Variant report

rSNPs within LD-proxies of this variant (count:25)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54181000-54200400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:54198200-54200400	Weak transcription	HSMMtube	muscle
3	chr6:54198800-54201000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:54198800-54202200	Enhancers	HUVEC	blood vessel
5	chr6:54199200-54200800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:54199600-54200600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:54199600-54201000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:54200000-54201000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:54200000-54201600	Enhancers	A549	lung
10	chr6:54200000-54201600	Enhancers	NH-A	brain
11	chr6:54200200-54201000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:54200200-54201000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:54200200-54201200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:54200200-54201200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:54200200-54201200	Enhancers	Hela-S3	cervix
16	chr6:54200200-54201400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:54200200-54201400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:54200200-54201400	Enhancers	HMEC	breast
19	chr6:54200200-54201400	Enhancers	HSMM	muscle
20	chr6:54200200-54201400	Enhancers	NHEK	skin
21	chr6:54200200-54201600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:54200200-54201600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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