Variant report

Variant	rs9464081
Chromosome Location	chr6:54287148-54287149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12178527	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28703250	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34011963	1.00[AMR][1000 genomes]
rs73444725	1.00[AMR][1000 genomes]
rs73444727	1.00[AMR][1000 genomes]
rs73444769	1.00[AMR][1000 genomes]
rs73444784	1.00[AMR][1000 genomes]
rs73446613	1.00[AMR][1000 genomes]
rs73446696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448718	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9395957	0.86[AFR][1000 genomes]
rs9464063	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474843	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474852	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474855	1.00[AMR][1000 genomes]
rs9474860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54284600-54292000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:54285200-54291400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:54285600-54291200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links