Variant report

Variant	rs9474843
Chromosome Location	chr6:54269579-54269580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12178527	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28703250	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34011963	1.00[AMR][1000 genomes]
rs73444725	1.00[AMR][1000 genomes]
rs73444727	1.00[AMR][1000 genomes]
rs73444769	1.00[AMR][1000 genomes]
rs73444784	1.00[AMR][1000 genomes]
rs73446613	1.00[AMR][1000 genomes]
rs73446696	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448718	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9395957	0.91[AFR][1000 genomes]
rs9464063	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9464076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464077	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464079	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464081	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474844	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474847	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474849	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474850	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474851	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474852	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474853	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474855	1.00[AMR][1000 genomes]
rs9474860	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9474843	SLC30A8	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54269000-54270400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:54269400-54270200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:54269400-54284400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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