Variant report

Variant	rs73446613
Chromosome Location	chr6:54232818-54232819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12178527	1.00[AMR][1000 genomes]
rs28703250	1.00[AMR][1000 genomes]
rs34011963	1.00[AMR][1000 genomes]
rs73444725	1.00[AMR][1000 genomes]
rs73444727	1.00[AMR][1000 genomes]
rs73444769	1.00[AMR][1000 genomes]
rs73444784	1.00[AMR][1000 genomes]
rs73446696	1.00[AMR][1000 genomes]
rs73448718	1.00[AMR][1000 genomes]
rs9464063	1.00[AMR][1000 genomes]
rs9464076	1.00[AMR][1000 genomes]
rs9464077	1.00[AMR][1000 genomes]
rs9464079	1.00[AMR][1000 genomes]
rs9464081	1.00[AMR][1000 genomes]
rs9474843	1.00[AMR][1000 genomes]
rs9474844	1.00[AMR][1000 genomes]
rs9474847	1.00[AMR][1000 genomes]
rs9474849	1.00[AMR][1000 genomes]
rs9474850	1.00[AMR][1000 genomes]
rs9474851	1.00[AMR][1000 genomes]
rs9474852	1.00[AMR][1000 genomes]
rs9474853	1.00[AMR][1000 genomes]
rs9474855	1.00[AMR][1000 genomes]
rs9474860	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3434705	chr6:54232193-54234741	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54211800-54256200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:54212000-54257400	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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