Variant report

Variant	rs73449910
Chromosome Location	chr13:39506758-39506759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39505076..39507328-chr13:39564629..39567532,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133115	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10220044	0.94[EUR][1000 genomes]
rs10492693	0.94[EUR][1000 genomes]
rs10492694	0.94[EUR][1000 genomes]
rs10492695	0.94[EUR][1000 genomes]
rs10492696	0.94[EUR][1000 genomes]
rs11839336	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11843499	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41451545	0.94[EUR][1000 genomes]
rs55968361	0.94[EUR][1000 genomes]
rs56112413	0.94[EUR][1000 genomes]
rs56236747	0.94[EUR][1000 genomes]
rs56305249	0.94[EUR][1000 genomes]
rs56907865	0.94[EUR][1000 genomes]
rs57433722	0.94[EUR][1000 genomes]
rs58046641	0.94[EUR][1000 genomes]
rs58370881	0.94[EUR][1000 genomes]
rs59380005	0.94[EUR][1000 genomes]
rs59459164	0.94[EUR][1000 genomes]
rs59972103	0.94[EUR][1000 genomes]
rs60085625	0.94[EUR][1000 genomes]
rs60285569	0.94[EUR][1000 genomes]
rs73449935	0.89[EUR][1000 genomes]
rs73449941	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73449988	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73451803	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73451806	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73451807	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73451812	0.94[EUR][1000 genomes]
rs73451815	0.94[EUR][1000 genomes]
rs73451817	0.94[EUR][1000 genomes]
rs73451821	0.94[EUR][1000 genomes]
rs73451824	0.94[EUR][1000 genomes]
rs73451826	0.94[EUR][1000 genomes]
rs73451828	0.94[EUR][1000 genomes]
rs73451831	0.94[EUR][1000 genomes]
rs73451833	0.94[EUR][1000 genomes]
rs73451852	0.94[EUR][1000 genomes]
rs73451862	0.94[EUR][1000 genomes]
rs73451869	0.94[EUR][1000 genomes]
rs73451871	0.94[EUR][1000 genomes]
rs73451872	0.94[EUR][1000 genomes]
rs73451876	0.94[EUR][1000 genomes]
rs73451890	0.94[EUR][1000 genomes]
rs74050304	0.94[EUR][1000 genomes]
rs74050307	0.94[EUR][1000 genomes]
rs74050308	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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