Variant report

Variant	rs10220044
Chromosome Location	chr13:39526228-39526229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39521347..39523381-chr13:39525181..39526841,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10492693	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10492694	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10492695	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10492696	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11839336	1.00[EUR][1000 genomes]
rs11843499	1.00[EUR][1000 genomes]
rs41451545	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4350465	1.00[CHB][hapmap]
rs4627199	1.00[CHB][hapmap]
rs55968361	1.00[EUR][1000 genomes]
rs56112413	1.00[EUR][1000 genomes]
rs56236747	1.00[EUR][1000 genomes]
rs56305249	1.00[EUR][1000 genomes]
rs56907865	1.00[EUR][1000 genomes]
rs57433722	1.00[EUR][1000 genomes]
rs58046641	1.00[EUR][1000 genomes]
rs58370881	1.00[EUR][1000 genomes]
rs59380005	1.00[EUR][1000 genomes]
rs59459164	1.00[EUR][1000 genomes]
rs59972103	1.00[EUR][1000 genomes]
rs60085625	1.00[EUR][1000 genomes]
rs60285569	1.00[EUR][1000 genomes]
rs73449910	0.94[EUR][1000 genomes]
rs73449935	0.95[EUR][1000 genomes]
rs73449941	1.00[EUR][1000 genomes]
rs73449988	1.00[EUR][1000 genomes]
rs73451803	1.00[EUR][1000 genomes]
rs73451806	1.00[EUR][1000 genomes]
rs73451807	1.00[EUR][1000 genomes]
rs73451812	1.00[EUR][1000 genomes]
rs73451815	1.00[EUR][1000 genomes]
rs73451817	1.00[EUR][1000 genomes]
rs73451821	1.00[EUR][1000 genomes]
rs73451824	1.00[EUR][1000 genomes]
rs73451826	1.00[EUR][1000 genomes]
rs73451828	1.00[EUR][1000 genomes]
rs73451831	1.00[EUR][1000 genomes]
rs73451833	1.00[EUR][1000 genomes]
rs73451852	1.00[EUR][1000 genomes]
rs73451862	1.00[EUR][1000 genomes]
rs73451869	1.00[EUR][1000 genomes]
rs73451871	1.00[EUR][1000 genomes]
rs73451872	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73451876	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73451890	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74050304	1.00[EUR][1000 genomes]
rs74050307	1.00[EUR][1000 genomes]
rs74050308	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1053818	chr13:39512274-39533011	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2753642	chr13:39522300-39649000	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv520639	chr13:39525264-39529226	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv976049	chr13:39526141-39537715	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39520200-39541600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:39525400-39526400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr13:39525400-39526800	Weak transcription	Pancreas	Pancrea
4	chr13:39525800-39526400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr13:39525800-39526400	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr13:39525800-39526400	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr13:39525800-39526400	Flanking Active TSS	HUVEC	blood vessel
8	chr13:39525800-39526600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr13:39526000-39526400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr13:39526000-39526400	Active TSS	Right Atrium	heart
11	chr13:39526200-39526400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:39526200-39526400	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr13:39526200-39526600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:39526200-39526600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr13:39526200-39526600	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr13:39526200-39526600	Enhancers	Fetal Intestine Small	intestine
17	chr13:39526200-39527000	Enhancers	HMEC	breast
18	chr13:39526200-39529200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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