Variant report

Variant	rs41451545
Chromosome Location	chr13:39525339-39525340
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39521347..39523381-chr13:39525181..39526841,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10220044	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10492693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10492694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10492695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10492696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11839336	1.00[EUR][1000 genomes]
rs11843499	1.00[EUR][1000 genomes]
rs4350465	1.00[CHB][hapmap]
rs4627199	1.00[CHB][hapmap]
rs55968361	1.00[EUR][1000 genomes]
rs56112413	1.00[EUR][1000 genomes]
rs56236747	1.00[EUR][1000 genomes]
rs56305249	1.00[EUR][1000 genomes]
rs56907865	1.00[EUR][1000 genomes]
rs57433722	1.00[EUR][1000 genomes]
rs58046641	1.00[EUR][1000 genomes]
rs58370881	1.00[EUR][1000 genomes]
rs59380005	1.00[EUR][1000 genomes]
rs59459164	1.00[EUR][1000 genomes]
rs59972103	1.00[EUR][1000 genomes]
rs60085625	1.00[EUR][1000 genomes]
rs60285569	1.00[EUR][1000 genomes]
rs73449910	0.94[EUR][1000 genomes]
rs73449935	0.95[EUR][1000 genomes]
rs73449941	1.00[EUR][1000 genomes]
rs73449988	1.00[EUR][1000 genomes]
rs73451803	1.00[EUR][1000 genomes]
rs73451806	1.00[EUR][1000 genomes]
rs73451807	1.00[EUR][1000 genomes]
rs73451812	1.00[EUR][1000 genomes]
rs73451815	1.00[EUR][1000 genomes]
rs73451817	1.00[EUR][1000 genomes]
rs73451821	1.00[EUR][1000 genomes]
rs73451824	1.00[EUR][1000 genomes]
rs73451826	1.00[EUR][1000 genomes]
rs73451828	1.00[EUR][1000 genomes]
rs73451831	1.00[EUR][1000 genomes]
rs73451833	1.00[EUR][1000 genomes]
rs73451852	1.00[EUR][1000 genomes]
rs73451862	1.00[EUR][1000 genomes]
rs73451869	1.00[EUR][1000 genomes]
rs73451871	1.00[EUR][1000 genomes]
rs73451872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73451876	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73451890	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74050304	1.00[EUR][1000 genomes]
rs74050307	1.00[EUR][1000 genomes]
rs74050308	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1053818	chr13:39512274-39533011	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv983513	chr13:39521370-39526141	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv2753642	chr13:39522300-39649000	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv520639	chr13:39525264-39529226	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39520200-39541600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:39521800-39526200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:39525000-39525600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:39525200-39525400	Enhancers	Pancreas	Pancrea

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