Variant report

Variant	rs73469322
Chromosome Location	chr9:73861172-73861173
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12003125	1.00[AMR][1000 genomes]
rs34640181	1.00[AMR][1000 genomes]
rs57535377	0.98[AFR][1000 genomes]
rs57728903	0.91[AFR][1000 genomes]
rs60573626	0.83[AFR][1000 genomes]
rs61156901	1.00[AMR][1000 genomes]
rs73467749	0.81[AFR][1000 genomes]
rs73473308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480139	1.00[AMR][1000 genomes]
rs73480154	1.00[AMR][1000 genomes]
rs73480167	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1052375	chr9:73793681-73893133	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv540152	chr9:73793681-73893133	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv430073	chr9:73825109-73869960	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv430074	chr9:73825109-73870395	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv893443	chr9:73859086-74008905	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73857600-73861600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73858200-73861600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:73858600-73861800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:73858600-73862000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:73859400-73864600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:73859400-73864800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:73859800-73865400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:73860400-73862000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:73860600-73861200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:73860800-73861400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:73860800-73862000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:73861000-73861200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr9:73861000-73861800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr9:73861000-73862600	Enhancers	Liver	Liver
15	chr9:73861000-73864600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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