Variant report

Variant	rs73480167
Chromosome Location	chr9:73726974-73726975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12003119	1.00[AMR][1000 genomes]
rs12003125	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12003135	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12005835	1.00[AFR][1000 genomes]
rs2909298	1.00[AMR][1000 genomes]
rs34640181	1.00[AMR][1000 genomes]
rs55660446	1.00[AMR][1000 genomes]
rs56944106	1.00[AMR][1000 genomes]
rs57148792	1.00[AMR][1000 genomes]
rs59376285	1.00[AMR][1000 genomes]
rs59612871	0.92[AFR][1000 genomes]
rs61078626	1.00[AMR][1000 genomes]
rs61156901	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61466764	1.00[AMR][1000 genomes]
rs7019245	1.00[AMR][1000 genomes]
rs7037044	1.00[AMR][1000 genomes]
rs7045070	1.00[AMR][1000 genomes]
rs73468158	1.00[AMR][1000 genomes]
rs73469322	1.00[AMR][1000 genomes]
rs73473308	1.00[AMR][1000 genomes]
rs73480139	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480154	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73647191	1.00[AMR][1000 genomes]
rs7854433	1.00[AMR][1000 genomes]
rs7868025	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73720400-73735200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:73723400-73727800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:73723600-73727600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:73725200-73727600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:73725600-73728000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:73726000-73727000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr9:73726400-73727000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr9:73726400-73728600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:73726600-73727000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:73726600-73727800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:73726800-73727000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr9:73726800-73727800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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