Variant report
| Variant | rs55660446 |
|---|---|
| Chromosome Location | chr9:73593454-73593455 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:73592208..73595932-chr9:73600747..73604403,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12003119 | 1.00[AMR][1000 genomes] |
| rs12003125 | 1.00[AMR][1000 genomes] |
| rs12003135 | 1.00[AMR][1000 genomes] |
| rs2909298 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56944106 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57148792 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59376285 | 1.00[AMR][1000 genomes] |
| rs61078626 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61156901 | 1.00[AMR][1000 genomes] |
| rs61466764 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7019245 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7037044 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7045070 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73468158 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73480139 | 1.00[AMR][1000 genomes] |
| rs73480154 | 1.00[AMR][1000 genomes] |
| rs73480167 | 1.00[AMR][1000 genomes] |
| rs73647191 | 1.00[AMR][1000 genomes] |
| rs7854433 | 1.00[AMR][1000 genomes] |
| rs7868025 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893441 | chr9:73486034-73594114 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv430072 | chr9:73509677-73640530 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv6558 | chr9:73589091-73600375 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:73593400-73593800 | Enhancers | Stomach Mucosa | stomach |
