Variant report

Variant	rs12003125
Chromosome Location	chr9:73731817-73731818
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12003119	1.00[AMR][1000 genomes]
rs12003135	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12005835	0.98[AFR][1000 genomes]
rs2909298	1.00[AMR][1000 genomes]
rs34640181	1.00[AMR][1000 genomes]
rs55660446	1.00[AMR][1000 genomes]
rs56944106	1.00[AMR][1000 genomes]
rs57148792	1.00[AMR][1000 genomes]
rs59376285	1.00[AMR][1000 genomes]
rs59612871	0.93[AFR][1000 genomes]
rs61078626	1.00[AMR][1000 genomes]
rs61156901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61466764	1.00[AMR][1000 genomes]
rs7019245	1.00[AMR][1000 genomes]
rs7037044	1.00[AMR][1000 genomes]
rs7045070	1.00[AMR][1000 genomes]
rs73468158	1.00[AMR][1000 genomes]
rs73469322	1.00[AMR][1000 genomes]
rs73473308	1.00[AMR][1000 genomes]
rs73480139	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480154	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480167	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73647191	1.00[AMR][1000 genomes]
rs7854433	1.00[AMR][1000 genomes]
rs7868025	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73720400-73735200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:73728000-73736000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:73728400-73734600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73730000-73733000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr9:73730000-73733400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr9:73730000-73733600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr9:73730200-73734200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:73730600-73732400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:73730800-73732200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr9:73730800-73733800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:73730800-73736200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:73731000-73733200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:73731200-73733200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:73731200-73734600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr9:73731200-73734600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:73731400-73734200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:73731600-73732400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:73731800-73734600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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