Variant report

Variant	rs57148792
Chromosome Location	chr9:73606811-73606812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12003119	1.00[AMR][1000 genomes]
rs12003125	1.00[AMR][1000 genomes]
rs12003135	1.00[AMR][1000 genomes]
rs2909298	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55660446	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56944106	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59376285	1.00[AMR][1000 genomes]
rs61078626	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61156901	1.00[AMR][1000 genomes]
rs61466764	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7019245	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7037044	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7045070	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73468158	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480139	1.00[AMR][1000 genomes]
rs73480154	1.00[AMR][1000 genomes]
rs73480167	1.00[AMR][1000 genomes]
rs73647191	1.00[AMR][1000 genomes]
rs7854433	1.00[AMR][1000 genomes]
rs7868025	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73604000-73614800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73604600-73609600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:73605200-73610600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:73605200-73614000	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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