Variant report

Variant	rs7854433
Chromosome Location	chr9:73539375-73539376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73539136..73540497-chr9:73616477..73617366,8	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12003119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12003125	1.00[AMR][1000 genomes]
rs12003135	1.00[AMR][1000 genomes]
rs2909298	1.00[AMR][1000 genomes]
rs55660446	1.00[AMR][1000 genomes]
rs56944106	1.00[AMR][1000 genomes]
rs57148792	1.00[AMR][1000 genomes]
rs59376285	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61078626	1.00[AMR][1000 genomes]
rs61156901	1.00[AMR][1000 genomes]
rs61466764	1.00[AMR][1000 genomes]
rs7019245	1.00[AMR][1000 genomes]
rs7037044	1.00[AMR][1000 genomes]
rs7045070	1.00[AMR][1000 genomes]
rs73465074	1.00[AFR][1000 genomes]
rs73468158	1.00[AMR][1000 genomes]
rs73480139	1.00[AMR][1000 genomes]
rs73480154	1.00[AMR][1000 genomes]
rs73480167	1.00[AMR][1000 genomes]
rs73647191	1.00[AMR][1000 genomes]
rs7868025	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1043383	chr9:73517062-73556679	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73529600-73539800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73530000-73539400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:73536600-73539600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:73536600-73539800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:73536600-73541600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:73536800-73539400	Weak transcription	NHEK	skin
7	chr9:73536800-73539800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:73536800-73539800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:73538400-73539400	Enhancers	NH-A	brain
10	chr9:73538600-73539600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr9:73538600-73539600	Enhancers	HSMM	muscle
12	chr9:73539000-73539400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:73539000-73539400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:73539000-73539400	Enhancers	HMEC	breast
15	chr9:73539000-73539400	Enhancers	HUVEC	blood vessel
16	chr9:73539000-73539600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:73539000-73539600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:73539000-73539600	Enhancers	Adipose Nuclei	Adipose
19	chr9:73539000-73539600	Enhancers	HSMMtube	muscle
20	chr9:73539000-73539600	Enhancers	NHLF	lung
21	chr9:73539000-73539800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr9:73539000-73540000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:73539000-73540200	Active TSS	Aorta	Aorta
24	chr9:73539000-73540200	Flanking Active TSS	Osteobl	bone
25	chr9:73539000-73540400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:73539200-73539600	Active TSS	Muscle Satellite Cultured Cells	--
27	chr9:73539200-73539600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr9:73539200-73539800	Active TSS	NHDF-Ad	bronchial
29	chr9:73539200-73540200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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