Variant report

Variant	rs73480154
Chromosome Location	chr9:73719518-73719519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12003119	1.00[AMR][1000 genomes]
rs12003125	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12003135	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12005835	0.97[AFR][1000 genomes]
rs2909298	1.00[AMR][1000 genomes]
rs34640181	1.00[AMR][1000 genomes]
rs55660446	1.00[AMR][1000 genomes]
rs56944106	1.00[AMR][1000 genomes]
rs57148792	1.00[AMR][1000 genomes]
rs59376285	1.00[AMR][1000 genomes]
rs59612871	0.88[AFR][1000 genomes]
rs61078626	1.00[AMR][1000 genomes]
rs61156901	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61466764	1.00[AMR][1000 genomes]
rs7019245	1.00[AMR][1000 genomes]
rs7037044	1.00[AMR][1000 genomes]
rs7045070	1.00[AMR][1000 genomes]
rs73468158	1.00[AMR][1000 genomes]
rs73469322	1.00[AMR][1000 genomes]
rs73473308	1.00[AMR][1000 genomes]
rs73480139	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480167	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73647191	1.00[AMR][1000 genomes]
rs7854433	1.00[AMR][1000 genomes]
rs7868025	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73717800-73726600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:73719000-73725000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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