Variant report

Variant	rs73495500
Chromosome Location	chr9:102174520-102174521
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102167803..102170248-chr9:102173145..102174805,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1025901	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1025902	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10441760	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10441761	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10760684	0.83[ASN][1000 genomes]
rs10760685	0.85[ASN][1000 genomes]
rs10819666	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819667	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819672	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10819674	0.85[ASN][1000 genomes]
rs10988815	0.83[AFR][1000 genomes]
rs10988816	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988829	0.85[ASN][1000 genomes]
rs12238127	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1530379	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1972233	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2416768	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743345	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743346	0.83[AFR][1000 genomes]
rs4743347	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743348	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743349	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743350	0.83[AFR][1000 genomes]
rs4743353	0.85[ASN][1000 genomes]
rs55750347	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57483311	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7027953	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7030762	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7032399	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7032541	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7040144	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042668	0.82[AFR][1000 genomes]
rs7042691	0.83[AFR][1000 genomes]
rs7847405	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7857445	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858078	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7862197	0.84[ASN][1000 genomes]
rs878449	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs880597	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102173200-102174800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:102173600-102176000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:102173600-102176200	Weak transcription	NHDF-Ad	bronchial
4	chr9:102173600-102177600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:102173600-102177800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:102173800-102174600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:102174000-102178600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:102174200-102176000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:102174200-102178400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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