Variant report

Variant	rs4743353
Chromosome Location	chr9:102209473-102209474
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1025901	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1025902	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10441760	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10441761	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10760684	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10760685	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819666	0.85[ASN][1000 genomes]
rs10819667	0.85[ASN][1000 genomes]
rs10819672	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10819674	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988816	0.85[ASN][1000 genomes]
rs10988829	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12238127	0.85[ASN][1000 genomes]
rs1360260	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1530379	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1972233	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2416768	0.85[ASN][1000 genomes]
rs4743345	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4743347	0.87[ASN][1000 genomes]
rs4743348	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4743349	0.85[ASN][1000 genomes]
rs55750347	0.85[ASN][1000 genomes]
rs57483311	0.84[ASN][1000 genomes]
rs7027953	0.85[ASN][1000 genomes]
rs7030762	0.80[EUR][1000 genomes]
rs7032399	0.85[ASN][1000 genomes]
rs7032541	0.85[ASN][1000 genomes]
rs7040144	0.85[ASN][1000 genomes]
rs73495500	0.85[ASN][1000 genomes]
rs7847405	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7857445	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7858078	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7862197	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7866560	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs878449	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs880597	0.85[ASN][1000 genomes]
rs9886848	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv527165	chr9:102194921-102214169	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv6636	chr9:102197504-102242604	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102208000-102213400	Weak transcription	Adipose Nuclei	Adipose
2	chr9:102208000-102213400	Weak transcription	Psoas Muscle	Psoas
3	chr9:102208400-102209600	Enhancers	NHLF	lung
4	chr9:102208400-102209800	Enhancers	NHDF-Ad	bronchial
5	chr9:102208400-102210200	Enhancers	Fetal Heart	heart
6	chr9:102208600-102213200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:102208800-102213400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:102209000-102209800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:102209000-102213400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:102209000-102213400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr9:102209000-102213600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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