Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1025901	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1025902	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10441760	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10441761	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10760684	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10760685	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10819672	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10819674	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10988829	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1360260	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1530379	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1972233	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4743345	0.83[EUR][1000 genomes]
rs4743347	0.81[ASN][1000 genomes]
rs4743348	0.83[EUR][1000 genomes]
rs4743353	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7847405	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7857445	0.84[EUR][1000 genomes]
rs7858078	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7862197	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs878449	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6636	chr9:102197504-102242604	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102222400-102227600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:102225400-102228400	Weak transcription	Fetal Intestine Large	intestine
3	chr9:102226600-102229000	Enhancers	Fetal Brain Female	brain
4	chr9:102226800-102229000	Enhancers	Colon Smooth Muscle	Colon
5	chr9:102226800-102229600	Enhancers	Brain Germinal Matrix	brain
6	chr9:102226800-102229600	Enhancers	Fetal Brain Male	brain
7	chr9:102227000-102228600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:102227000-102228800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr9:102227200-102228200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:102227200-102228600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr9:102227200-102228800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:102227200-102229600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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