Variant report

Variant	rs73519227
Chromosome Location	chr6:109925501-109925502
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56944954	0.81[AFR][1000 genomes]
rs58512734	0.83[AFR][1000 genomes]
rs60869272	1.00[AFR][1000 genomes]
rs61585869	1.00[AFR][1000 genomes]
rs73519203	1.00[AFR][1000 genomes]
rs73519230	1.00[AFR][1000 genomes]
rs73519236	1.00[AFR][1000 genomes]
rs73519238	1.00[AFR][1000 genomes]
rs73520940	1.00[AFR][1000 genomes]
rs73523146	1.00[AFR][1000 genomes]
rs73523150	1.00[AFR][1000 genomes]
rs73523158	1.00[AFR][1000 genomes]
rs73523160	1.00[AFR][1000 genomes]
rs73523178	1.00[AFR][1000 genomes]
rs73527068	1.00[AFR][1000 genomes]
rs73527071	1.00[AFR][1000 genomes]
rs73529303	1.00[AFR][1000 genomes]
rs73529305	1.00[AFR][1000 genomes]
rs73531421	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019389	chr6:109868058-109987502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538416	chr6:109868058-109987502	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv917318	chr6:109885195-109982375	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109923600-109932000	Weak transcription	Spleen	Spleen
2	chr6:109923600-109952600	Weak transcription	Right Ventricle	heart
3	chr6:109925200-109932000	Weak transcription	Psoas Muscle	Psoas
4	chr6:109925200-109932600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:109925400-109926400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:109925400-109926600	Weak transcription	Thymus	Thymus
7	chr6:109925400-109926800	Weak transcription	Aorta	Aorta
8	chr6:109925400-109927600	Weak transcription	Lung	lung
9	chr6:109925400-109927600	Weak transcription	Pancreas	Pancrea
10	chr6:109925400-109932600	Weak transcription	Brain Angular Gyrus	brain
11	chr6:109925400-109932600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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