Variant report

Variant	rs73523160
Chromosome Location	chr6:109881926-109881927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56944954	0.81[AFR][1000 genomes]
rs58512734	0.83[AFR][1000 genomes]
rs60869272	1.00[AFR][1000 genomes]
rs61585869	1.00[AFR][1000 genomes]
rs73519203	1.00[AFR][1000 genomes]
rs73519227	1.00[AFR][1000 genomes]
rs73519230	1.00[AFR][1000 genomes]
rs73519236	1.00[AFR][1000 genomes]
rs73519238	1.00[AFR][1000 genomes]
rs73520940	1.00[AFR][1000 genomes]
rs73523146	1.00[AFR][1000 genomes]
rs73523150	1.00[AFR][1000 genomes]
rs73523158	1.00[AFR][1000 genomes]
rs73523178	1.00[AFR][1000 genomes]
rs73527068	1.00[AFR][1000 genomes]
rs73527071	1.00[AFR][1000 genomes]
rs73529303	1.00[AFR][1000 genomes]
rs73529305	1.00[AFR][1000 genomes]
rs73531421	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019389	chr6:109868058-109987502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538416	chr6:109868058-109987502	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109867000-109885800	Weak transcription	Ovary	ovary
2	chr6:109871400-109884000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:109878400-109886200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:109878800-109894000	Weak transcription	Pancreas	Pancrea
5	chr6:109878800-109903600	Weak transcription	Psoas Muscle	Psoas
6	chr6:109879000-109903800	Weak transcription	Thymus	Thymus
7	chr6:109879000-109906000	Weak transcription	Left Ventricle	heart
8	chr6:109879000-109917400	Weak transcription	Aorta	Aorta
9	chr6:109879400-109893400	Weak transcription	Primary T cells from cord blood	blood
10	chr6:109879600-109885000	Weak transcription	Primary B cells from cord blood	blood
11	chr6:109879600-109886400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:109879800-109882800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:109879800-109900600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:109880400-109884000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:109880800-109900000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:109881000-109900000	Weak transcription	Adipose Nuclei	Adipose
17	chr6:109881200-109884000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:109881200-109902400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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