Variant report

Variant	rs73523150
Chromosome Location	chr6:109867535-109867536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56944954	0.81[AFR][1000 genomes]
rs58512734	0.83[AFR][1000 genomes]
rs60869272	1.00[AFR][1000 genomes]
rs61585869	1.00[AFR][1000 genomes]
rs73519203	1.00[AFR][1000 genomes]
rs73519227	1.00[AFR][1000 genomes]
rs73519230	1.00[AFR][1000 genomes]
rs73519236	1.00[AFR][1000 genomes]
rs73519238	1.00[AFR][1000 genomes]
rs73520940	1.00[AFR][1000 genomes]
rs73523146	1.00[AFR][1000 genomes]
rs73523158	1.00[AFR][1000 genomes]
rs73523160	1.00[AFR][1000 genomes]
rs73523178	1.00[AFR][1000 genomes]
rs73527068	1.00[AFR][1000 genomes]
rs73527071	1.00[AFR][1000 genomes]
rs73529303	1.00[AFR][1000 genomes]
rs73529305	1.00[AFR][1000 genomes]
rs73531421	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109848400-109870400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:109850800-109870000	Weak transcription	Left Ventricle	heart
3	chr6:109852200-109878400	Weak transcription	Pancreas	Pancrea
4	chr6:109859200-109868000	Weak transcription	Spleen	Spleen
5	chr6:109859200-109873000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:109860200-109870000	Weak transcription	Adipose Nuclei	Adipose
7	chr6:109860600-109870000	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:109861200-109870200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:109862200-109869600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:109862200-109869600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:109862200-109870000	Weak transcription	Primary B cells from cord blood	blood
12	chr6:109862200-109878200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:109862200-109878400	Weak transcription	Thymus	Thymus
14	chr6:109863000-109870000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:109863600-109867800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:109864200-109870200	Weak transcription	Brain Anterior Caudate	brain
17	chr6:109864200-109870200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:109865000-109867600	Weak transcription	Fetal Brain Female	brain
19	chr6:109865400-109870000	Weak transcription	Liver	Liver
20	chr6:109865800-109869000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:109866400-109870200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:109867000-109869600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:109867000-109885800	Weak transcription	Ovary	ovary
24	chr6:109867400-109869600	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links